PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03916.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 806aa    MW: 85233.8 Da    PI: 8.4082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03916.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11394436754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  Zmw_sc03916.1.g00040.1.am.mk 394 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 436
                                   79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17390463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8393436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-12394441No hitNo description
Gene3DG3DSA:4.10.280.102.5E-16394448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.34E-4505568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MGSSVISNVL ALSLACQPVQ IQALAALACQ RELRHRSALR LRPLLPRRPP PEESEQASCR  60
VAMLSRLGNP LWMQEDDGQD QGQEQQHAPP PAMGVIPAQG QEDQNLLALA AAAAGSVGFR  120
APGMLDDDWY FDGMAANAGT GTGAQGSMFL APQAQAGGSV TCAGSQMFSL FNMGNAGPFD  180
LHGFDLGLAG GGSSGGELSS IAGNASNSSS LSLIPAGNAG LLGSFGGFGT APAPIQEFGG  240
LGGFDVFDNG AGSSAAPPPA SASLTAPFAA RGKAAVLRPL EIFPPVGAQP TLFQKRALRR  300
NAGEEEDDKK RKAAAAVAVG ASSGGGDSLL LDDGDDDGLS IDASGLNYDS EDGKGVEESD  360
KKNGKDSNAN STVTAGGTGD GKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPRISKM  420
DRASILGDAI EYLKELMQKI SDLQNELESP PCAASPLPPT PTSFRPLTPT LPSLPSRVKE  480
ELCPNALPSP TQQPSVEVRI REGRVVNIHM FCARRPGLLL SAMRAIEGLG LDVQQAVISC  540
FNGFSLDVFK AELSKEGPGL LPEEIKAVLL QSAGWSRRGF TATRHCLAAL DLAAGFRNRR  600
RRCYSERLVL PAASHAPFRR THGAPGTESR STGSSRPARR RRRSCDGCRS QSGWRRTLTL  660
NPNHEPVRVR ARSAALLPVG ELRDPRIDGA HSLPVCSYVV IAPVLPVLFT RKREPISIAR  720
MVACHGGFCE SRQCAITPPV LQGKAGSAWL ELDLPPNGCC SFGSYCGWAQ EASAFGHEPL  780
SVELEGMSSD LEFRVPGFIR WTSSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14389446663Transcription factor MYC2
5gnj_B1e-14389446663Transcription factor MYC2
5gnj_E1e-14389446663Transcription factor MYC2
5gnj_F1e-14389446663Transcription factor MYC2
5gnj_G1e-14389446663Transcription factor MYC2
5gnj_I1e-14389446663Transcription factor MYC2
5gnj_M1e-14389446663Transcription factor MYC2
5gnj_N1e-14389446663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383401KKKGLPAKNLMAERRRRKK
2395402ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167620.10.0transcription factor ICE1-like
TrEMBLA0A482KF710.0A0A482KF71_9POAL; ICE1
STRINGSb05g019530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101