PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03924.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 287aa    MW: 29898.2 Da    PI: 10.0657
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03924.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-0687112227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   kt+ C+ +     Ck G++C+FaHg+
  Zmw_sc03924.1.g00070.1.sm.mk  87 KTRMCNKYNTAEGCKWGSKCHFAHGE 112
                                   89**********************96 PP
2zf-CCCH35.41.8e-11253278127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +kt+lC +f + G C +G+rC+FaHg+
  Zmw_sc03924.1.g00070.1.sm.mk 253 FKTKLCENFNK-GSCTFGERCHFAHGE 278
                                   69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577134No hitNo description
SMARTSM003566.22346IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3853447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-1482117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-884116IPR000571Zinc finger, CCCH-type
SMARTSM003560.9785112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.72785113IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-12154226IPR004088K Homology domain, type 1
SMARTSM003221.1E-8156226IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.0E-14157225IPR004088K Homology domain, type 1
PROSITE profilePS5008413.586157221IPR004088K Homology domain, type 1
PfamPF000137.3E-9159222IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-16250284IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7252278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474252279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8252283IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9253278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDSGRKRTAP EGANGAKRPK AAHTVFPLCS TAGCPFGASC HFLHNFPGGY QAVAKMTNLG  60
GPPVPSPMGR MPMGPGVPDG PPTPSVKTRM CNKYNTAEGC KWGSKCHFAH GERELGKPMP  120
LNNSVGGPPM GPGPNGHFMP PPMPVPDMVP PSTFGASATA KISVDAFLAG GIIGKGGINT  180
KHISRVTGAK LAIRDNEADP NLKNIELEGT FDQIKHASAM VTELIVRIGG KAPQQTKNNT  240
GRGSHAGGPG SNFKTKLCEN FNKGSCTFGE RCHFAHGEGE LRKPAAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-161zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-150C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1111e-165A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.J02805.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127