PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03956.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 138aa MW: 14039.5 Da PI: 4.2439

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03956.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	76.9	5.7e-24	19	70	103	154
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Zmw_sc03956.1.g00030.1.sm.mk 19 GSFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 70 47***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.1E-20	19	69	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.1E-19	21	68	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MSPCFLPNGD AVVGDGSGGS FPPELSVEAV FRCVRIGPVD EPDAELAYQT AVSIGGHTFK 60 GILRDHGPAD DAAVGQLPPS SAEYHQLTGA GREESSPAGS SEAAATAVTS AAVLMDPYPT 120 PIGAFAAGTQ FFPHNPRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813341.1	7e-72	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A3L6S0K4	1e-70	A0A3L6S0K4_PANMI; Protein SHI RELATED SEQUENCE 1
STRING	Pavir.J38504.1.p	5e-71	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124