PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03959.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 193aa MW: 21620.9 Da PI: 4.4686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03959.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.6e-05	87	103	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++Le A+eY+k+Lq Zmw_sc03959.1.g00020.1.sm.mk 87 DKASMLEDAIEYLKQLQ 103 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.7E-5	86	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-5	86	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MDGQQLDLIM RHKSMANICE SEDALGSSES EHARPARPRG KRSRAAEVHN LSEKEMLIDP 60 DAHEIGAEEE EQDKREDEGA ADAFLTDKAS MLEDAIEYLK QLQLQVQVAF QQDMMLKHRH 120 ISDQENPFVP GDKVKPDRQE TSTVNADNYD SISLRIAQSQ DMVPKNSDGV LCMPYLHCLQ 180 SGDPEADTRA GSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804956.1	3e-35	transcription factor EC-like isoform X1
TrEMBL	A0A2T8KY92	6e-34	A0A2T8KY92_9POAL; Uncharacterized protein
TrEMBL	A0A368PTP7	4e-35	A0A368PTP7_SETIT; Uncharacterized protein
STRING	Pavir.J11618.1.p	9e-35	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76