PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03971.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 296aa MW: 33056.6 Da PI: 5.4701

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03971.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	2	33	16	48
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 v++lG++ W+tIa+ ++ gR +kqc++rw+++l Zmw_sc03971.1.g00030.1.es.mkhc 2 VNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 33 99*************.***********97 PP
2	Myb_DNA-binding	53.1	7.5e-17	39	81	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Zmw_sc03971.1.g00030.1.es.mkhc 39 KEAWTQEEEIRLIHAHQTYGNK-WAELSKFLP-GRTDNAIKNHWH 81 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	5.08E-9	1	33	No hit	No description
SMART	SM00717	0.34	1	35	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.75	1	33	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-19	2	40	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-9	2	33	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.68E-29	13	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.115	34	88	IPR017930	Myb domain
SMART	SM00717	4.5E-15	38	86	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-15	39	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-22	41	88	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-12	41	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEIRL IHAHQTYGNK 60 WAELSKFLPG RTDNAIKNHW HSSVKKKIDS YRASGLLAQF QGIMHVEYPA VSLNIDSSSA 120 MTQQHSEDSG FNVGGVEGST ELSQSSLAKA SCSQEEQIEP SLDSHVHAHN SLCQEPCYNN 180 ADNVASVLPE MQHIADSDED THLQKFSQTT ELPFDIDKEP KNSMSTDMQT SSELAGQLQY 240 TQTMYNSENH GGSFNPYAVD PDVPISMSHN IPKYGHNVDV MCEVGISCDK YLESEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-37	1	88	18	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-37	1	88	18	105	C-Myb DNA-Binding Domain
1msf_C	1e-37	1	88	18	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960645.1	1e-128	transcription factor MYB3R-1
Refseq	XP_004960646.1	1e-128	transcription factor MYB3R-1
Refseq	XP_004960647.1	1e-128	transcription factor MYB3R-1
TrEMBL	A0A368QCK3	1e-126	A0A368QCK3_SETIT; Uncharacterized protein
STRING	Pavir.J07395.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79