PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03985.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 417aa MW: 44796.9 Da PI: 8.1299

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03985.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	211.6	4.2e-65	108	376	98	357
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 a aIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+++R+ +gpp++RiTg g+ ++++l +tg+rL+ fA+++++p Zmw_sc03985.1.g00030.1.am.mk 108 AAGAILDAVEGARRIHILDLDAAHGVQWPPLLQAISERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLSTFARSIHLP 184 789*********************************988888*******....9***************** PP GRAS 176 fefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 f f++l +++++++ +L+++p+E+laVn+v+ lh+l + +e ++Lk vk +sP vv+++e Zmw_sc03985.1.g00030.1.am.mk 185 FCFTPLllscatsnqevagASTTTDSCVATTLELHPDETLAVNCVMFLHKLG-GP----DELAAFLKWVKAMSPAVVTMAE 260 **999999999887666678888899*****************8.33....33467************* PP GRAS 244 qeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 +e ++ ++ +r++ a+++ysa+f++lea++p+ s+er vE+e+lgrei+ +++ +g + + le+W ++ + Zmw_sc03985.1.g00030.1.am.mk 261 REPAGGGWdrvdELPRRVAVAMDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAALSYSGGR---WWRGLERWGAAAR 338 55533224449**********************************************9998...7899***** PP GRAS 321 eaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 +aGF+p pls +a++qa+lllr ++ s+gy v+e +++ Zmw_sc03985.1.g00030.1.am.mk 339 AAGFTPRPLSAFAVSQARLLLRLHYpSEGYLVQEARDA 376 *******************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.983	1	372	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-62	108	376	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWTAAA GKATAMLGSL HHSSSSSDTD 60 NDNKNGNTNT DNNNNSSGVL AAAPSARDLV LACADLLQRG DLQAAHRAAG AILDAVEGAR 120 RIHILDLDAA HGVQWPPLLQ AISERADPAA GPPEVRITGA GADRDTLLRT GSRLSTFARS 180 IHLPFCFTPL LLSCATSNQE VAGASTTTDS CVATTLELHP DETLAVNCVM FLHKLGGPDE 240 LAAFLKWVKA MSPAVVTMAE REPAGGGWDR VDELPRRVAV AMDHYSAVFE ALEATVPPGS 300 RERLLVEQEV LGREIEAALS YSGGRWWRGL ERWGAAARAA GFTPRPLSAF AVSQARLLLR 360 LHYPSEGYLV QEARDAAAAV RFVMAVVGRH RHRRGFYSPH CMHSCTPAAA TTTSTTT

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWTAAA GKATAMLGSL HHSSSSSDTD  60
NDNKNGNTNT DNNNNSSGVL AAAPSARDLV LACADLLQRG DLQAAHRAAG AILDAVEGAR  120
RIHILDLDAA HGVQWPPLLQ AISERADPAA GPPEVRITGA GADRDTLLRT GSRLSTFARS  180
IHLPFCFTPL LLSCATSNQE VAGASTTTDS CVATTLELHP DETLAVNCVM FLHKLGGPDE  240
LAAFLKWVKA MSPAVVTMAE REPAGGGWDR VDELPRRVAV AMDHYSAVFE ALEATVPPGS  300
RERLLVEQEV LGREIEAALS YSGGRWWRGL ERWGAAARAA GFTPRPLSAF AVSQARLLLR  360
LHYPSEGYLV QEARDAAAAV RFVMAVVGRH RHRRGFYSPH CMHSCTPAAA TTTSTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-28	108	368	116	354	Protein SCARECROW
5b3h_A	1e-28	108	368	115	353	Protein SCARECROW
5b3h_D	1e-28	108	368	115	353	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810768.1	1e-152	protein MONOCULM 1-like
Refseq	XP_025810769.1	1e-152	protein MONOCULM 1-like
Swissprot	Q84MM9	1e-130	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A3L6S343	1e-152	A0A3L6S343_PANMI; Protein MONOCULM 1-like
STRING	Si008068m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]