PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03997.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 372aa MW: 40405.6 Da PI: 10.8242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03997.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.6e-06	145	173	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 ++h+ +E+ RR++iN+++ L++ +P +s Zmw_sc03997.1.g00050.1.am.mk 145 TNHSLAEKVRREKINERMKLLQDPVPGCS 173 79***********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-7	140	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-7	145	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.34E-5	145	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MFGFQLPPPG AELASNAAGI YRGYVTPVVT YKLRPCPPPP GLEHDNFPVD SVLVERVTTN 60 GGAKRMTMLR QVGGVHSDGW TAEATAKRSW DGSSEGARRV HGFSRRERAQ QRCRSPQDER 120 AGREGGRGAR KEEHIHVRAR KGKATNHSLA EKVRREKINE RMKLLQDPVP GCSKFLSMKL 180 ATVNPHLGIG VERALTKDLL IRFPGAPSSA PIGSSFSQEM MPKLPLLSES GVLERGVHGA 240 GNSNVFRTAV QVQLQLDELP VHLAGVGGFA VPCEKITVRL ASGHRTYTTT ISVYRCVGTR 300 LASRPGIHST PVITTLLMVI FTLSGSGILC RRLFLVIDRA VIRYRLGGKR ASLEATEDVP 360 PPISGDGLKA FS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MFGFQLPPPG AELASNAAGI YRGYVTPVVT YKLRPCPPPP GLEHDNFPVD SVLVERVTTN  60
GGAKRMTMLR QVGGVHSDGW TAEATAKRSW DGSSEGARRV HGFSRRERAQ QRCRSPQDER  120
AGREGGRGAR KEEHIHVRAR KGKATNHSLA EKVRREKINE RMKLLQDPVP GCSKFLSMKL  180
ATVNPHLGIG VERALTKDLL IRFPGAPSSA PIGSSFSQEM MPKLPLLSES GVLERGVHGA  240
GNSNVFRTAV QVQLQLDELP VHLAGVGGFA VPCEKITVRL ASGHRTYTTT ISVYRCVGTR  300
LASRPGIHST PVITTLLMVI FTLSGSGILC RRLFLVIDRA VIRYRLGGKR ASLEATEDVP  360
PPISGDGLKA FS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821587.1	1e-38	transcription factor bHLH49-like
TrEMBL	A0A2S3I3F5	3e-37	A0A2S3I3F5_9POAL; Uncharacterized protein
STRING	Pavir.Fa00598.1.p	4e-37	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33675	3	3