PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04014.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 86aa MW: 9066.07 Da PI: 7.6482

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04014.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	78.1	1.2e-24	1	48	10	58
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++NhAa++GghavDGC+Ef+p+ geegt al+CaACgCHR+FHRr v+ Zmw_sc04014.1.g00010.1.am.mk 1 QRNHAARMGGHAVDGCREFLPA-GEEGTGGALRCAACGCHRSFHRRVVQ 48 69*****************9.999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-13	1	43	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-24	1	47	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.99	1	46	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.6E-22	1	45	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
QRNHAARMGG HAVDGCREFL PAGEEGTGGA LRCAACGCHR SFHRRVVQRC CCCFCRDDTD 60 AVAHAPAAPG RWDCSPESTA SSTTAS

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151712.2	1e-26	mini zinc finger 3
Swissprot	Q0J5F8	3e-26	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	B6U404	5e-27	B6U404_MAIZE; Mini zinc finger 3
STRING	OGLUM08G16680.1	1e-24	(Oryza glumipatula)
STRING	OS08T0438100-01	7e-25	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]