PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04023.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 176aa MW: 20413.6 Da PI: 9.8214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04023.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3e-06	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zmw_sc04023.1.g00020.1.sm.mk 21 FVCEVCNKGFQREQNLQLHRRGH 43 89*******************88 PP
2	zf-C2H2	13.7	0.00018	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zmw_sc04023.1.g00020.1.sm.mk 98 WKCDKCSKRYAVQSDWKAHSKIC 120 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.51E-8	20	43	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-6	20	43	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.1E-6	21	43	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	21	43	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	21	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.4E-5	86	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.51E-8	93	118	No hit	No description
SMART	SM00355	140	98	118	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPLQAQRR 60 RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC 120 GTREYRCDCG TLFSRYAASP GDPFYYSYMM SASSFYPYMI AASWRRHGIV MGFCTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-21	94	135	3	44	Zinc finger protein JACKDAW
5b3h_F	2e-21	94	135	3	44	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446943.1	4e-99	protein indeterminate-domain 5, chloroplastic
Refseq	XP_021318855.1	4e-99	protein indeterminate-domain 5, chloroplastic
Swissprot	O22759	3e-86	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A1Z5REH8	6e-99	A0A1Z5REH8_SORBI; Uncharacterized protein
STRING	Pavir.Gb01057.1.p	8e-99	(Panicum virgatum)
STRING	LPERR04G17920.1	5e-99	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]