PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04057.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 360aa MW: 39556 Da PI: 7.0314

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04057.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.8e-09	127	164	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + Zmw_sc04057.1.g00030.1.sm.mkhc 127 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 164 664459******************************88 PP
2	BELL	94.6	9.2e-31	2	60	14	72
BELL 14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ll++Vd++Y +y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai q+ Zmw_sc04057.1.g00030.1.sm.mkhc 2 ALLDQVDRKYMHYRHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGVQV 60 69*****************************************************8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-4	1	58	IPR006563	POX domain
Pfam	PF07526	1.3E-26	1	56	IPR006563	POX domain
PROSITE profile	PS50071	12.001	105	168	IPR001356	Homeobox domain
CDD	cd00086	1.10E-12	108	169	No hit	No description
SMART	SM00389	1.7E-9	108	172	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-17	109	175	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-28	111	174	IPR009057	Homeodomain-like
Pfam	PF05920	2.4E-17	125	164	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MALLDQVDRK YMHYRHQMQI VMSSFDAVAG AGAARPYTAL ALQTISRHFR SLRDAIGVQV 60 QFLRRSLGEK DTSAQGGGLS RLRYIDQHLR QQRAMQQFGM MQQPQHAWRP QRGLPESAVS 120 VLRAWLFEHF LHPYPKDSEK LMLARQTGLS RGQVSNWFIN ARVRLWKPMI EEMYKEEFGA 180 EMDSHSSSEN AGNKGKDEAI SSEDHDEFQS PSSAAKHGGA GHHHLNTFKS EALGGIDVGL 240 SSLDGAMGTY ATSLNLSHHA PGAIGTVNSG SSLLQDALAH HHHGGDARFV SYGDMAGHLG 300 GYDGGSVSLT LGLQHRNDAG TVPAEQQGLL YGNAGDFEFM NGGEDRQRFG SSQLFHDFVA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MALLDQVDRK YMHYRHQMQI VMSSFDAVAG AGAARPYTAL ALQTISRHFR SLRDAIGVQV  60
QFLRRSLGEK DTSAQGGGLS RLRYIDQHLR QQRAMQQFGM MQQPQHAWRP QRGLPESAVS  120
VLRAWLFEHF LHPYPKDSEK LMLARQTGLS RGQVSNWFIN ARVRLWKPMI EEMYKEEFGA  180
EMDSHSSSEN AGNKGKDEAI SSEDHDEFQS PSSAAKHGGA GHHHLNTFKS EALGGIDVGL  240
SSLDGAMGTY ATSLNLSHHA PGAIGTVNSG SSLLQDALAH HHHGGDARFV SYGDMAGHLG  300
GYDGGSVSLT LGLQHRNDAG TVPAEQQGLL YGNAGDFEFM NGGEDRQRFG SSQLFHDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-17	114	171	1	58	Homeobox protein Meis1
4xrs_B	1e-17	114	171	1	58	Homeobox protein Meis1
5bng_A	1e-17	114	172	1	59	Homeobox protein Meis2
5bng_B	1e-17	114	172	1	59	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985591.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_004985592.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_004985593.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_004985594.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-104	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A1E5W1C9	0.0	A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRING	Si034960m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP901	38	131

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]