PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04076.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 715aa MW: 77393.5 Da PI: 7.6158

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04076.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	67.4	3.1e-21	70	129	2	61
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y+++++++l+ isw + gns+vv+d+++fa++vLp +Fkh+nf+ FvRQLn+Y Zmw_sc04076.1.g00070.1.am.mk 70 FLSKTYDLVSEPALDGAISWGAAGNSIVVWDPSTFARDVLPYHFKHNNFSTFVRQLNTYS 129 9**********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.0E-24	66	171	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.2E-22	66	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.35E-20	68	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.5E-18	70	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-10	70	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-10	108	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-10	121	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MNRNRANAPE YPTSSVSMEA LLEPKLEDEA ALPLSSPGPF VPLDQLMPGP GLDPPRPLEA 60 LLQGPQLPPF LSKTYDLVSE PALDGAISWG AAGNSIVVWD PSTFARDVLP YHFKHNNFST 120 FVRQLNTYSR GVDPVTGKLN PCHGTPRSSS LDPEHTLRRE KTALLQEVAR LKQEHRQTIE 180 HMSTLNQRLE SADDRQKQMI SFLAKLLQNP TFVRQLKLQR EQKEIDSTRV KRKYLKHVPH 240 GSIESGDMAD LQNFLLEEDD LIFGKNAENI GLEGFEAPED IGALVQGFNT QDELGSGAEL 300 LKTPPASSPL GQDPTIGRHK GKNVLCPGLD ATSSEAACLA SLGENTGLLS GTMLEPAAND 360 EQMWGIDTSA ALQSSCSGSS QQAYSSLASD PYLMEIVNKP EKFWDLDFQP LDEGDLPLDK 420 CPSDAVQAVN GTTCGAVSCM NVTAVPIIVA ATALPRSCAL RHPKPKAQTF SRAPIASPRG 480 EIGQGHRAAP NWTREAGGTR TGNAALAAPG QPVATRISYD EATAAAWCPR ASARDQPASH 540 LAEIRCVFRP VARRVSMPPL VPPAEQKRQR QEVRAAGAAV APREALAQRS ASFHGRGAAE 600 QQRQHHHLLR QKPRTQPDLL AGVRGQGVRR TGADANVPSA AGTARKAAPS KVLVAVAVQR 660 SMWPLHVMAR TEWRVADLVA AAVELYVKEG RRPLLPSADP SAFSLHYSQF SLQST

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MNRNRANAPE YPTSSVSMEA LLEPKLEDEA ALPLSSPGPF VPLDQLMPGP GLDPPRPLEA  60
LLQGPQLPPF LSKTYDLVSE PALDGAISWG AAGNSIVVWD PSTFARDVLP YHFKHNNFST  120
FVRQLNTYSR GVDPVTGKLN PCHGTPRSSS LDPEHTLRRE KTALLQEVAR LKQEHRQTIE  180
HMSTLNQRLE SADDRQKQMI SFLAKLLQNP TFVRQLKLQR EQKEIDSTRV KRKYLKHVPH  240
GSIESGDMAD LQNFLLEEDD LIFGKNAENI GLEGFEAPED IGALVQGFNT QDELGSGAEL  300
LKTPPASSPL GQDPTIGRHK GKNVLCPGLD ATSSEAACLA SLGENTGLLS GTMLEPAAND  360
EQMWGIDTSA ALQSSCSGSS QQAYSSLASD PYLMEIVNKP EKFWDLDFQP LDEGDLPLDK  420
CPSDAVQAVN GTTCGAVSCM NVTAVPIIVA ATALPRSCAL RHPKPKAQTF SRAPIASPRG  480
EIGQGHRAAP NWTREAGGTR TGNAALAAPG QPVATRISYD EATAAAWCPR ASARDQPASH  540
LAEIRCVFRP VARRVSMPPL VPPAEQKRQR QEVRAAGAAV APREALAQRS ASFHGRGAAE  600
QQRQHHHLLR QKPRTQPDLL AGVRGQGVRR TGADANVPSA AGTARKAAPS KVLVAVAVQR  660
SMWPLHVMAR TEWRVADLVA AAVELYVKEG RRPLLPSADP SAFSLHYSQF SLQST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	9e-16	62	128	11	78	Heat shock factor protein 1
5hdg_A	8e-16	67	128	7	68	Heat shock factor protein 1
5hdn_A	8e-16	67	128	7	68	Heat shock factor protein 1
5hdn_B	8e-16	67	128	7	68	Heat shock factor protein 1
5hdn_C	8e-16	67	128	7	68	Heat shock factor protein 1
5hdn_D	8e-16	67	128	7	68	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813039.1	0.0	heat stress transcription factor A-3-like
Swissprot	Q6H6Q7	0.0	HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBL	A0A3L6QHX9	0.0	A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRING	Sb04g021490.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9010	30	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744] Mittal D,Madhyastha DA,Grover A Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Sci., 2012. 197: p. 102-13 [PMID:23116677]