PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04080.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 421aa    MW: 46589.1 Da    PI: 5.1159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04080.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-142671555
                                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                                  h + Er+RR+++N++f+ L+++lP+ a      K +K +iL +A eYI+sL+
  Zmw_sc04080.1.g00070.1.am.mk 26 HMMSERKRREKLNDSFQALKTVLPPgA------KKDKTSILIRAREYIRSLE 71
                                  8899********************966......99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.712170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-122371No hitNo description
SuperFamilySSF474599.81E-162387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-172589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-112671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-132776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF079111.4E-6345399IPR012876Protein of unknown function DUF1677, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
QQYYYYDQAS AAEAAAAAPS VNQLQHMMSE RKRREKLNDS FQALKTVLPP GAKKDKTSIL  60
IRAREYIRSL ESKASELQEK NKALESRLNH RGGNDAKHAA GNAEDSGEKV QIEITRAAKE  120
EHWEIEPRDL CTLKILVHSR CNMTDVVLRT LQCLKDQAAD DDVNLVSMST SSGVPPHTNS  180
SSPRALLTMQ IKSSLGAKWE EQLVKDAVEK VVADAAPTPP SAETAAAASR HHGEVDEEER  240
GQEHEQRVEE QQEERIVEEH VGEQLQRGDG VRAGSLEDIP ERDATSFPFA WVAAPLNSIS  300
LEIDVHFTAA MSLDVDLEAR LLLQCPCSGH QSSVWARSRA SSSLQDCPEE YIASVKAEFG  360
REISFGRRLL CELCSEAVKD EVAKAPRRKK GGNREVLEEG TPLYRELCDC SPQPPPALFT  420
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRE
23035RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSi001328m4e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182