PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04105.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 218aa MW: 24877.9 Da PI: 10.0195

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04105.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.8	5.8e-30	36	137	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L+ Zmw_sc04105.1.g00020.1.es.mkhc 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLD 114 99*************************9666668889************************************ PP TT-EEEEEE-SS..SEE..EEEE CS B3 76 egDfvvFkldgr..sefelvvkv 96 +gD+v F++++ + +l++++ Zmw_sc04105.1.g00020.1.es.mkhc 115 AGDVVHFERMRGlgIGDRLFIGF 137 ******775433334455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-41	30	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.49E-29	33	140	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.40E-29	35	126	No hit	No description
PROSITE profile	PS50863	13.69	36	140	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-23	36	141	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-27	36	139	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAMNHISQEH PQVWPWGVAM YTNLHYHHHY EKEHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGDSGE KGLILSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH 120 FERMRGLGIG DRLFIGFRRR GESATTRAVA PPLPAVRVAA AAQSAGEQQP WSPMCYSTSG 180 SYPNSPANSY AYRHSVDHDR SNTPHAGKRL RTRNGKAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-51	31	140	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-51	31	140	3	113	B3 domain-containing transcription factor NGA1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827829.1	1e-130	B3 domain-containing protein Os11g0156000-like isoform X1
Swissprot	Q53QI0	3e-99	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A2T7CKD2	1e-129	A0A2T7CKD2_9POAL; Uncharacterized protein
STRING	Pavir.Hb01814.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]