PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04110.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 220aa MW: 23804.8 Da PI: 10.6749

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04110.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.1	6.4e-23	115	159	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++ +CErH++rgr rsrk++e Zmw_sc04110.1.g00020.1.sm.mk 115 DAEPGRCRRTDGKKWRCSRDAVGDQRYCERHINRGRYRSRKHVEG 159 79****************************************986 PP
2	QLQ	58.1	2.7e-20	55	91	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Zmw_sc04110.1.g00020.1.sm.mk 55 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 91 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-12	55	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.308	56	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.9E-14	56	89	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.422	115	159	IPR014977	WRC domain
Pfam	PF08879	3.4E-19	116	158	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MALPAPSSSC SFVGSAATSS GGPRMLSFSS SNGGAGLGLS SDASNMQGVL SRVRGPFTPT 60 QWMELEHQAL IYKHFAVNAP VPSSLLLPIK RSFNPWGTFG SSSLGWAQFR PGCSDAEPGR 120 CRRTDGKKWR CSRDAVGDQR YCERHINRGR YRSRKHVEGQ KATPTIAGQA MAVSTTSNTM 180 AWQQQLKCSA ANATNPFPRE SNSFSLFLTQ KQDPPVAMNV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827128.1	1e-101	growth-regulating factor 8-like isoform X1
Refseq	XP_025827130.1	1e-102	growth-regulating factor 8-like isoform X3
Swissprot	Q6AWY1	4e-83	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A0A9UY24	1e-104	A0A0A9UY24_ARUDO; Uncharacterized protein
STRING	Pavir.Hb00712.1.p	3e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12960	27	31

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]