PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04124.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 566aa MW: 60500.2 Da PI: 9.3862

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04124.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	282	341	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++tkeq+ +Le l+e+ r+psae+++++A++l ++ ++V++WFqN++a++++ Zmw_sc04124.1.g00020.1.am.mk 282 ARWNPTKEQVAVLEGLYENgVRTPSAEQIQHIAARLrdhgPIEAKNVFYWFQNHKARDRQ 341 6***************99**************999**************996 PP
2	Wus_type_Homeobox	106.2	2e-34	282	343	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQ+ +Le ly++G+rtP++e+iq+i+a+L+ +G ie kNVfyWFQN+kaR+rqkq Zmw_sc04124.1.g00020.1.am.mk 282 ARWNPTKEQVAVLEGLYENGVRTPSAEQIQHIAARLRDHGPIEAKNVFYWFQNHKARDRQKQ 343 7***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.0E-5	279	346	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-8	282	341	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-17	282	341	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.24E-12	282	349	IPR009057	Homeodomain-like
CDD	cd00086	1.53E-7	283	343	No hit	No description
PROSITE profile	PS50071	10.641	287	342	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MPLAISIPTY GLWLLPYVPY SEAVGVMCPA AALQETGETG IRMKLATQSD RLLSEMIERP 60 LPGAGTSKEF PFIPKAIYPA SCSSTRAAPL RCATLRPVQL PLVFRAGAEP HDMLASLLFS 120 RLIICVHCNV ATSTETILRF RLLTPPPPMT PHPVGPADAA PTSTMLRYLS CDTVRGSTAL 180 HAATRVFCPG IAAPLAIAAR CQPRPHRNAA AVTLNAHATA SPRSSCCPES RFPAPGRKRD 240 RETLAMETPQ GGVHGEAAGA GSPSDARVSP PLSPASAALL NARWNPTKEQ VAVLEGLYEN 300 GVRTPSAEQI QHIAARLRDH GPIEAKNVFY WFQNHKARDR QKQKQESFAY FTRLLHRTPP 360 LPVIIRPPGP PYPHLGRVPA SPPVLTMAPP AAAACNNGGD GGGNHVMYRA PYYMPPPPPP 420 PPPPPEASAA NAGYYNLQQA HHRAVMYPRM DITQDKQMHQ AGMYHATPYG PSHVAPAKRG 480 GADGGASADQ HAGRSRETLE LFPLRPTFVP PDNKARGAAS LTSPAQLTAS ASFSGGESES 540 LVDSPKSDAV APLPFYDFFG LQSAGR

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MPLAISIPTY GLWLLPYVPY SEAVGVMCPA AALQETGETG IRMKLATQSD RLLSEMIERP  60
LPGAGTSKEF PFIPKAIYPA SCSSTRAAPL RCATLRPVQL PLVFRAGAEP HDMLASLLFS  120
RLIICVHCNV ATSTETILRF RLLTPPPPMT PHPVGPADAA PTSTMLRYLS CDTVRGSTAL  180
HAATRVFCPG IAAPLAIAAR CQPRPHRNAA AVTLNAHATA SPRSSCCPES RFPAPGRKRD  240
RETLAMETPQ GGVHGEAAGA GSPSDARVSP PLSPASAALL NARWNPTKEQ VAVLEGLYEN  300
GVRTPSAEQI QHIAARLRDH GPIEAKNVFY WFQNHKARDR QKQKQESFAY FTRLLHRTPP  360
LPVIIRPPGP PYPHLGRVPA SPPVLTMAPP AAAACNNGGD GGGNHVMYRA PYYMPPPPPP  420
PPPPPEASAA NAGYYNLQQA HHRAVMYPRM DITQDKQMHQ AGMYHATPYG PSHVAPAKRG  480
GADGGASADQ HAGRSRETLE LFPLRPTFVP PDNKARGAAS LTSPAQLTAS ASFSGGESES  540
LVDSPKSDAV APLPFYDFFG LQSAGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814413.1	2e-70	WUSCHEL-related homeobox 5-like
TrEMBL	A0A2T7DEM5	1e-74	A0A2T7DEM5_9POAL; Uncharacterized protein
STRING	Si004427m	5e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7509	35	48