PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04137.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 372aa    MW: 40533.9 Da    PI: 7.7741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04137.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-17251300255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Zmw_sc04137.1.g00080.1.am.mk 251 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 300
                                   69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-21251309IPR016177DNA-binding domain
SMARTSM003806.6E-38251314IPR001471AP2/ERF domain
PROSITE profilePS5103223.512251308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30251309IPR001471AP2/ERF domain
PfamPF008471.1E-10252300IPR001471AP2/ERF domain
CDDcd000181.53E-30252308No hitNo description
PRINTSPR003671.8E-9252263IPR001471AP2/ERF domain
PRINTSPR003671.8E-9274290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLDDYRVVWH HCETPHEIIG KGFVVVATAG AIITGPGPVL YGCTYQYSAR GGMDNVATTA  60
TRGSPSSPSR TRQSRPDPQH CAAASCTQHD WEGTLARYGP ATFRTRACIR TRGVLLAVGL  120
TRIHAPFFPD LDLPPSTDPS SKISHSDHDN AMAYLLHDML AKPAFIMCSI CCRPRSLEPY  180
ARVPQSIEIE RTNSTAMKRP QQLHAHSVHS FLKYSSLRVV SMDHMAATDL LLLPATSTIA  240
GGGGGGSGQQ QYRGVRKRKW GKWVSEIRQP GTKTRIWLGS FESAEMAAVA HDVAALRLRG  300
RDAQLNFPGS AVPGRAGELA GSDEEFDLDL GSPRLWAEMA EAMLLDPPRW DTGVSDAEVA  360
QCWSHGSLWD AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-16250308463ATERF1
3gcc_A8e-16250308463ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389