PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04141.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 203aa MW: 22595.7 Da PI: 9.9112

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04141.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.2	2.4e-30	17	67	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ Zmw_sc04141.1.g00100.1.sm.mk 17 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQ 67 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.654	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-29	14	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-21	17	67	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.27E-13	17	68	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	19	68	IPR001005	SANT/Myb domain
Pfam	PF14379	5.8E-10	81	107	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MQGTYGGGMA ALSRDPKPRL RWTPDLHERF VDAVTKLGGP DKATPKSVLR LMGMKGLTLY 60 HLKSHLQDSL HKASVSPPQR LLVQKKLQMR IEAQGKYLKA ILEKAHRNIT FDANGSGNIE 120 STRSQLTDFN LALSGFVDNA THVYEENKGQ LVKAISNDID NHKDHHLSFQ LYNAGSQEAK 180 DVKRTPETED TLLLDLNIKG GNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	17	67	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	17	67	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318852.1	7e-87	myb family transcription factor PHL11
Refseq	XP_021318853.1	7e-87	myb family transcription factor PHL11
Swissprot	C0SVS4	9e-42	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	Q7XPT2	2e-87	Q7XPT2_ORYSJ; OSJNBa0083N12.9 protein
STRING	OGLUM04G23960.1	3e-88	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]