PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04143.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 369aa MW: 39576.1 Da PI: 11.0834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04143.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.1e-06	317	342	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er RR+ri +++ L+el+P+ Zmw_sc04143.1.g00100.1.am.mk 317 HSIAERLRRERIAERMRALQELVPNT 342 99**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-7	310	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.72E-4	310	351	No hit	No description
PROSITE profile	PS50888	10.455	312	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-6	314	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAGAFRLIED ESRAEAALVQ GLAGVEAIDA VRVDAELPTH ARGSSGGALF HEIMHEHVRE 60 IMRRREKVSP HTRPKPTTRR YDDGVGGNKR QASEAPLTHD HSRITSHHFT LARSKRLSFR 120 ASCGRRRRAD RDPKSLIMAG QPTPPQGPED DFLDQFFSMA AGGSYSAAAA GGGRVAGDQP 180 FSLALSLDAA AEASGSGKRL GVAAEGGKAV SVPPPPTRLS LPLSPFSLSP LHQMNLCACY 240 VLKSRVSPLQ DRDAVQLPGL FPPVFGAGLQ QPHLRPNPPP QVFHAHQQKQ GGAGVGPQPP 300 VPRPKVRARR GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKVLSMSR LGGAGAVAQL 360 VSDIPLSVK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAGAFRLIED ESRAEAALVQ GLAGVEAIDA VRVDAELPTH ARGSSGGALF HEIMHEHVRE  60
IMRRREKVSP HTRPKPTTRR YDDGVGGNKR QASEAPLTHD HSRITSHHFT LARSKRLSFR  120
ASCGRRRRAD RDPKSLIMAG QPTPPQGPED DFLDQFFSMA AGGSYSAAAA GGGRVAGDQP  180
FSLALSLDAA AEASGSGKRL GVAAEGGKAV SVPPPPTRLS LPLSPFSLSP LHQMNLCACY  240
VLKSRVSPLQ DRDAVQLPGL FPPVFGAGLQ QPHLRPNPPP QVFHAHQQKQ GGAGVGPQPP  300
VPRPKVRARR GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKVLSMSR LGGAGAVAQL  360
VSDIPLSVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	326	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152044.1	3e-80	uncharacterized protein LOC100285681
Refseq	XP_021306867.1	3e-80	transcription factor UNE12 isoform X1
TrEMBL	A0A1B6QHG7	7e-79	A0A1B6QHG7_SORBI; Uncharacterized protein
TrEMBL	B6U846	6e-79	B6U846_MAIZE; BHLH transcription factor
STRING	GRMZM2G004356_P01	1e-79	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80