PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04203.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 705aa MW: 73257.9 Da PI: 6.2094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04203.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.4e-06	136	166	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.a 30 +rr+ +e+Er RR+ + ++eL l+P + Zmw_sc04203.1.g00040.1.am.mk 136 KRRKTPEIERARRRTMSGLYAELAALIPGvP 166 79999***********************744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.28E-4	133	166	No hit	No description
PROSITE profile	PS50888	9.089	135	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.71E-5	221	283	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.7E-4	230	281	No hit	No description
CDD	cd02116	7.35E-4	230	281	No hit	No description
SuperFamily	SSF51126	1.17E-111	328	704	IPR011050	Pectin lyase fold/virulence factor
Gene3D	G3DSA:2.160.20.10	5.7E-122	328	704	IPR012334	Pectin lyase fold
Pfam	PF00295	1.2E-93	366	691	IPR000743	Glycoside hydrolase, family 28
SMART	SM00710	2200	423	445	IPR006626	Parallel beta-helix repeat
SMART	SM00710	4.4	484	510	IPR006626	Parallel beta-helix repeat
SMART	SM00710	420	511	532	IPR006626	Parallel beta-helix repeat
SMART	SM00710	6000	534	554	IPR006626	Parallel beta-helix repeat
SMART	SM00710	4	564	585	IPR006626	Parallel beta-helix repeat
SMART	SM00710	2300	595	616	IPR006626	Parallel beta-helix repeat
SMART	SM00710	3000	631	671	IPR006626	Parallel beta-helix repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004650	Molecular Function	polygalacturonase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MTGWGQLNRG YERMESRSAT QGWGDVGRRH QAHKKWRGSR GGETVGRGIE RTVEAEDEME 60 EGAGGEQSGE TMKAAEPEEA CSDLTSKPGP YRAGNHLTSH RRTLIDRAMV GGEAPVTPSL 120 AAEGKRSPAT AAPSSKRRKT PEIERARRRT MSGLYAELAA LIPGVPARVS SPPVQRLLLC 180 SIVLDRVLTC RARGDGAGEM TTDGSGGAGP VVESSVDASC FAVRLPAARR PGSLSRVIEV 240 LHRHGVAVLA AAVTSDGGEA AVTVTTSAVA PSAVERIKAD ISSCIPGDEG LPACATEMAS 300 ACDAIRALFV LAAVCAASAT KRPGPSKADA PAAAPAGTLD ITKLGAADDG KTDSTKAVME 360 AWTSACAATG SVTLLIPAGD YLVGPLGFTG PCKGDVTIQV DGTLLGTNDL TKYQASWIEV 420 TRVDNIVITG SGTLDGQGKA VYIKDSTELK AMPNTLVLYY VTNGTVSGIK LFNSKFFHIN 480 IDKSKDITVK DVTITAPGDI ENTDGVHVVD SSNVTITNSS IGTGDDCVSV GPGCAGVTVS 540 GVTCGPGQGI SVGCLGRYKD EKDVSNVTVC DCVLKGTTNG VRIKSYEDAE SVITASHMTF 600 ENIRMEDVAN PIIIDQYYCP EKVCPGKQNS TSHVVVKDVV FRNITGTSST PEAVSLLCSE 660 SQPCSGVELI DVKVEYAGKN NKTMAVCSNA KGIAKGSISA LACLL

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MTGWGQLNRG YERMESRSAT QGWGDVGRRH QAHKKWRGSR GGETVGRGIE RTVEAEDEME  60
EGAGGEQSGE TMKAAEPEEA CSDLTSKPGP YRAGNHLTSH RRTLIDRAMV GGEAPVTPSL  120
AAEGKRSPAT AAPSSKRRKT PEIERARRRT MSGLYAELAA LIPGVPARVS SPPVQRLLLC  180
SIVLDRVLTC RARGDGAGEM TTDGSGGAGP VVESSVDASC FAVRLPAARR PGSLSRVIEV  240
LHRHGVAVLA AAVTSDGGEA AVTVTTSAVA PSAVERIKAD ISSCIPGDEG LPACATEMAS  300
ACDAIRALFV LAAVCAASAT KRPGPSKADA PAAAPAGTLD ITKLGAADDG KTDSTKAVME  360
AWTSACAATG SVTLLIPAGD YLVGPLGFTG PCKGDVTIQV DGTLLGTNDL TKYQASWIEV  420
TRVDNIVITG SGTLDGQGKA VYIKDSTELK AMPNTLVLYY VTNGTVSGIK LFNSKFFHIN  480
IDKSKDITVK DVTITAPGDI ENTDGVHVVD SSNVTITNSS IGTGDDCVSV GPGCAGVTVS  540
GVTCGPGQGI SVGCLGRYKD EKDVSNVTVC DCVLKGTTNG VRIKSYEDAE SVITASHMTF  600
ENIRMEDVAN PIIIDQYYCP EKVCPGKQNS TSHVVVKDVV FRNITGTSST PEAVSLLCSE  660
SQPCSGVELI DVKVEYAGKN NKTMAVCSNA KGIAKGSISA LACLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bhe_A	1e-19	428	618	113	314	POLYGALACTURONASE
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	148	RRKTPEIERARRR

Functional Description ? help Back to Top
Source	Description
UniProt	May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455693.1	0.0	exopolygalacturonase
Swissprot	P35339	1e-177	PGLR3_MAIZE; Exopolygalacturonase
TrEMBL	C5XLH9	0.0	C5XLH9_SORBI; Uncharacterized protein
STRING	Sb03g021050.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP407	2	3

Publications ? help Back to Top
Barakate A,Martin W,Quigley F,Mache R Characterization of a multigene family encoding an exopolygalacturonase in maize. J. Mol. Biol., 1993. 229(3): p. 797-801 [PMID:8433375]