PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04214.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 232aa MW: 25584.7 Da PI: 9.0591

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04214.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.2e-10	187	215	6	34
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 err+++NReAAr+sR+RKka++++Le+ Zmw_sc04214.1.g00010.1.am.mkhc 187 TERRLAQNREAARKSRLRKKAYVQQLETS 215 59************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	5.0E-7	188	229	No hit	No description
PROSITE profile	PS50217	8.726	188	232	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	188	218	No hit	No description
Pfam	PF00170	9.2E-8	188	219	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	189	204	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGGVDPCVIK GDAQTSKQSA GYLAARPPTL 60 EIFASWPMRH QQRLHSGNSP SVVSTSDSSS AQNTMSQMSQ MELVSPASSA QRQEVMMVTT 120 DDYSYYKPGL AAAAPPPPAP AAAPSFQQQP MQQLHGGDHD KHRLVMSPID EARHGGSVLF 180 FHEQALTERR LAQNREAARK SRLRKKAYVQ QLETSRVRLQ QVEHELQRAR SQ

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001104893.1	2e-75	transcription factor LG2
Swissprot	O49067	1e-76	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1D6N6P1	9e-82	A0A1D6N6P1_MAIZE; Basic leucine zipper protein
STRING	GRMZM2G060216_P01	6e-75	(Zea mays)

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]