PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04219.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 448aa    MW: 48795.7 Da    PI: 5.5539
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04219.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30214270259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                      Dg+nWrKYGqK+vk+s+++rsYYrCt  gC +kkkve++  d++vvei+Y+g Hnhe
  Zmw_sc04219.1.g00020.1.sm.mkhc 214 ADGFNWRKYGQKQVKSSDNSRSYYRCTNLGCLAKKKVEHCP-DGRVVEIIYRGAHNHE 270
                                     7****************************************.***************8 PP
2WRKY33.58.6e-11384405122
                                     ---SS-EEEEEEE--TT-SS-E CS
                            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                     ++Dgy+WrKYGqK vkg+++pr
  Zmw_sc04219.1.g00020.1.sm.mkhc 384 VNDGYRWRKYGQKIVKGNPNPR 405
                                     58*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-26207272IPR003657WRKY domain
PROSITE profilePS5081121.93208272IPR003657WRKY domain
SuperFamilySSF1182901.83E-23210272IPR003657WRKY domain
SMARTSM007744.8E-33213271IPR003657WRKY domain
PfamPF031062.1E-22215270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-9377405IPR003657WRKY domain
PROSITE profilePS5081113.081379405IPR003657WRKY domain
SuperFamilySSF1182901.7E-8379406IPR003657WRKY domain
SMARTSM007741.3E-4384429IPR003657WRKY domain
PfamPF031067.3E-7385405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAGDPEPEP AVENRPSVEE AAATSEAEET RPPPAEAPRS PTKEKLPASG AAAEEVEVEA  60
KTGAKDMKAE DKEKEKGKVE AKVVEVAEVN VEAKEKEVEP TRRPAGSSAE APILAVPMVA  120
VPCFIAPPGF QGQFVMSHQA ALASVTAQAQ MQLQSPVSSA YSEAPSSPFY IAPKAIMSLQ  180
QAPSAAEGTV CTPTADKLSS SESKSDHVVV NMVADGFNWR KYGQKQVKSS DNSRSYYRCT  240
NLGCLAKKKV EHCPDGRVVE IIYRGAHNHE PPQKTRFSKE RVTPIRVPSG DETLRLVNTE  300
IVDSCTPTYK LDQRTVTETS ENASEQQLFC SSDCEGDAGN RSEDEHPSAE PLPKRRTVEC  360
STPNLTPVLK TVREQKIIVQ AGKVNDGYRW RKYGQKIVKG NPNPRWVKPL INGVITVVHM  420
VDVLFNDLST TDNHWAIQHT GLDISDND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-122102721477Probable WRKY transcription factor 4
2lex_A1e-122102721477Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.10.0probable WRKY transcription factor 32
TrEMBLA0A368RK160.0A0A368RK16_SETIT; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455