PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04255.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 197aa    MW: 21659.1 Da    PI: 4.5344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04255.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-184389252
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Zmw_sc04255.1.g00060.1.am.mk 43 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 89
                                  69****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-184395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-274396IPR001471AP2/ERF domain
SMARTSM003805.9E-2743106IPR001471AP2/ERF domain
PROSITE profilePS5103220.17843103IPR001471AP2/ERF domain
PfamPF008471.7E-124389IPR001471AP2/ERF domain
CDDcd000188.02E-184478No hitNo description
PRINTSPR003672.4E-104455IPR001471AP2/ERF domain
PRINTSPR003672.4E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPDSDVTSPP WPSPLGTVEK RGCRRGGNGN SGCGGGSSKR HPTYRGVRMR AWGKWVSEIR  60
EPRKKSRIWL GTFPTPEMAA RAHDAAALVV KGPAAQQCGQ QAQGQAVDDD EELEEIVELP  120
PVDEECFAED DLTFRTPFHV DSDVAQPWYE MAWTAQAGVA AQDYEMVVPG LEQDHRLCTL  180
TDGNEVFSGF GSLLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-143495567Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380474.11e-31PREDICTED: ethylene-responsive transcription factor TINY
TrEMBLA0A0E0LCI42e-33A0A0E0LCI4_ORYPU; Uncharacterized protein
STRINGPavir.Da00839.1.p2e-34(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4874222