PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04276.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 198aa    MW: 20644.5 Da    PI: 9.1787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04276.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-192171155
                           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  ++++GVr ++ +gr++AeIrd +     r +r++lg+f+tae Aa+a++aa++ ++g
  Zmw_sc04276.1.g00070.1.sm.mk 21 PRFRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTAEAAARAYDAAALHFRG 71
                                  689*******.**********44.....55**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.38E-202181No hitNo description
PfamPF008474.1E-132171IPR001471AP2/ERF domain
SMARTSM003801.0E-352285IPR001471AP2/ERF domain
PROSITE profilePS5103224.4212279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-312279IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-222280IPR016177DNA-binding domain
PRINTSPR003671.3E-102334IPR001471AP2/ERF domain
PRINTSPR003671.3E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAPKTAPPSA AAAVSDGMME PRFRGVRKRP WGRYAAEIRD PVRKARVWLG TFDTAEAAAR  60
AYDAAALHFR GTKAKTNFPV AFSQARALPQ PKALAVSPSS STVELPSQDS PAPSLDLSLG  120
MPAAVAAQPF LFLDPRLAVT VAVPAPAPLR PVAVPANKAT TCRDDEQSDT GSSSSVVDAS  180
PAVDVGFDLN MPPPAEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-211783976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.15e-81ethylene-responsive transcription factor 4-like
TrEMBLA0A3L6Q0F76e-81A0A3L6Q0F7_PANMI; Ethylene-responsive transcription factor 4-like
STRINGPavir.Ga00485.1.p5e-81(Panicum virgatum)
STRINGPavir.Gb00545.1.p1e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537