PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04301.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 143aa MW: 16198.1 Da PI: 9.7954

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04301.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.2	1.6e-41	32	111	91	170
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+s++ + ++ + e+ ++++ + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfg Zmw_sc04301.1.g00050.1.am.mkhc 32 SSSSKFQLPMMYSAENGHLQEHALATRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFG 110 4555666667777777777777789*****************************************************9 PP YABBY 170 l 170 l Zmw_sc04301.1.g00050.1.am.mkhc 111 L 111 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-39	29	111	IPR006780	YABBY protein
SuperFamily	SSF47095	9.43E-9	55	105	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-5	59	105	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MWTLHQSTEN IRPQGIINGT SHDQFGHLEF GSSSSKFQLP MMYSAENGHL QEHALATRPP 60 EKRQRVPSAY NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHYPNIHFG LSSPGREVGK 120 KLVDETVAAV TTPDPTNKIQ GFY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804907.1	9e-63	protein YABBY 6-like isoform X1
Swissprot	Q2QM17	4e-49	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	A0A0A8Y151	8e-69	A0A0A8Y151_ARUDO; Uncharacterized protein
STRING	Pavir.Ca02862.1.p	9e-62	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121