PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04307.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 612aa    MW: 66455.8 Da    PI: 7.5004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04307.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12462508455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zmw_sc04307.1.g00100.1.sm.mk 462 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 508
                                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-4957242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-15461512No hitNo description
SuperFamilySSF474591.14E-18461523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10462508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-18462520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEIEDDAAIG GGTGGIWTEE DRALGAAVLG ADAFSYLTKG GGAISQGLVS ASLSVDMQNK  60
LQELVESDRP GAGWNYAIYW QLSRTKSGDF VLGWGDGSCR EPCDGEVGAA ASAGNDDTKQ  120
RMRKRVLQRL HIAFGGVDEE DYALGIDQVT DTEMFFLASM YFAFPRRTGG PGQVFAAGIP  180
LWIPNSERKV YPTNYCYRGF LADAAGFRTI VLVPFEGGVL ELGSMRHIAE SSDAIQNIRS  240
VFSGTSNNKA AAQKPEGNGP AATERSPSLA KIFGKDLNLG RPSAGPVAGV SKVDERSWEQ  300
RSAAGGGSLL PNVQKGLQNF TWSQARGLNS HQQKFGNGVL IVSNEAAQRS NGATDNSSAT  360
QFQLQKVLPP QKLQLQKLPQ IQKTPPMVNQ QQLQPQAPRQ IDFSTGSSSK AGVLVTRTSG  420
LDGESAEVDG LCKEEGPAPA VEDRRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  480
LRAVVPNISK MDKASLLGDA ITYITDLQKK LKEMETERER FLESGLVGGM PRPEVDIQVV  540
QDEVLVRVMS PMENHPVKRV FQAFEDAEVR IGESKVTGNN GMVVHSFTIK CPGSEQQTRE  600
KVIAAMSRAM NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28456518264Transcription factor MYC2
5gnj_B5e-28456518264Transcription factor MYC2
5gnj_E5e-28456518264Transcription factor MYC2
5gnj_F5e-28456518264Transcription factor MYC2
5gnj_G5e-28456518264Transcription factor MYC2
5gnj_I5e-28456518264Transcription factor MYC2
5gnj_M5e-28456518264Transcription factor MYC2
5gnj_N5e-28456518264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443451RRPRKRGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860