PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04325.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 616aa MW: 67883.2 Da PI: 8.5303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04325.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.7e-10	464	506	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ ++L +++Y+k+L Zmw_sc04325.1.g00050.1.am.mk 464 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSMLGDTIDYMKEL 506 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.79E-4	450	511	No hit	No description
PROSITE profile	PS50888	15.091	457	506	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-15	461	524	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-12	463	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	464	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-8	464	506	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00133	558	596	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MSRGHSEARV RSLYETCISR RDFAVKVSEL NPRSRAGQQS GEGDREGELV DEIAWKLMAA 60 DLLPAAPRRH GGGGPWRAAK ARALPGDGSA TVPVTGETAR RPRRRRTSPP VPRPASSLAT 120 CARGRPLSYS VDHSHAMDVV RVMIVKPSVT KKAVFLFKKA LTPRTSVTAL SSTSLTLSYP 180 QKTIGTVEIP SSGRTDYRVT GDGDPSTALP TRRQRPRPSV VVSKSQSGRG RANEAWFDSG 240 GVVVCRAEHC HRCFAGTEKR TSQPDRDASV DLLPLHAVLR ITFSVDGAFE LAIVRDCVVY 300 WTRDRASNRA AEEMELDEQA FLEEILSLRR DAWDCTDAVG DFFFTAAPAM ESDCSFQEHH 360 QRPPNSLSVL PTFTASYDHR KPPPAPGFDC LSDDVYGAST FGGPNAGDYG GEMGFLHVIE 420 PKAPLTEGTG LGICKVEPGL PDSKPPAPLS KKKRVDGMPS KNLMAERRRR KRLNDRLSML 480 RSVVPKISKM DRTSMLGDTI DYMKELLERI KQLQEEMDLQ EQQEAPGVLR VFRELNPNEM 540 VARNTPKFEV ERKEGGETTV EICCAAKPGL LMSTVSTLDT LGLDIQQAVV SCFNDFGMHA 600 SCFKVNYALF LELHQI

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MSRGHSEARV RSLYETCISR RDFAVKVSEL NPRSRAGQQS GEGDREGELV DEIAWKLMAA  60
DLLPAAPRRH GGGGPWRAAK ARALPGDGSA TVPVTGETAR RPRRRRTSPP VPRPASSLAT  120
CARGRPLSYS VDHSHAMDVV RVMIVKPSVT KKAVFLFKKA LTPRTSVTAL SSTSLTLSYP  180
QKTIGTVEIP SSGRTDYRVT GDGDPSTALP TRRQRPRPSV VVSKSQSGRG RANEAWFDSG  240
GVVVCRAEHC HRCFAGTEKR TSQPDRDASV DLLPLHAVLR ITFSVDGAFE LAIVRDCVVY  300
WTRDRASNRA AEEMELDEQA FLEEILSLRR DAWDCTDAVG DFFFTAAPAM ESDCSFQEHH  360
QRPPNSLSVL PTFTASYDHR KPPPAPGFDC LSDDVYGAST FGGPNAGDYG GEMGFLHVIE  420
PKAPLTEGTG LGICKVEPGL PDSKPPAPLS KKKRVDGMPS KNLMAERRRR KRLNDRLSML  480
RSVVPKISKM DRTSMLGDTI DYMKELLERI KQLQEEMDLQ EQQEAPGVLR VFRELNPNEM  540
VARNTPKFEV ERKEGGETTV EICCAAKPGL LMSTVSTLDT LGLDIQQAVV SCFNDFGMHA  600
SCFKVNYALF LELHQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	RRPRRR
2	451	471	KKRVDGMPSKNLMAERRRRKR
3	465	472	ERRRRKRL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99