PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04338.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 137aa MW: 14938.5 Da PI: 10.2297

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04338.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.4e-08	11	35	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC ++r G C+ d+C+FaHg+ Zmw_sc04338.1.g00010.1.sm.mk 11 YKTKLCAVWQR-GGCSN-DTCSFAHGK 35 9********.*.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.4E-12	5	41	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-6	9	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.972	10	36	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.6E-5	11	35	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MRGPPRRGPA YKTKLCAVWQ RGGCSNDTCS FAHGKAELRQ YPGSRTSFPP RRDLAVAWLC 60 FEIPTEVKRL LPELLKTENN SNKCKLVAEL GGIPTGGAHL IGDTPLRAIP GVIVPFITED 120 QLLKKGNLAI HVLPAGR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43