PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04418.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 210aa MW: 23107.9 Da PI: 9.5595

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04418.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.3e-11	165	193	6	34
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 err+++NReAAr+sR+RKka++++Le+ Zmw_sc04418.1.g00010.1.am.mk 165 TERRLAQNREAARKSRLRKKAYVQQLETS 193 59************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	4.25E-7	166	207	No hit	No description
PROSITE profile	PS50217	8.726	166	210	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-7	166	196	No hit	No description
Pfam	PF00170	5.0E-8	166	197	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MWPSGPIHSA PRSAGRPAAT TEFGGNSPSV VSTSDSSSAQ NTMSQMSQME LVSPASSAQR 60 QEVMMVTTDD YSYYKPGLAA AAPPPPAPAA APSFQQQPMQ QLHGDHDKHR LVMSPIDEAR 120 HGESVLFFHE QALVRMDRSF GLQHAPARVP VVAFVDGEVG HCAVTERRLA QNREAARKSR 180 LRKKAYVQQL ETSRVRLQQV EHELQRARSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818708.1	1e-44	transcription factor LG2 isoform X1
Swissprot	O49067	7e-41	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2T8IJA5	8e-46	A0A2T8IJA5_9POAL; Uncharacterized protein
STRING	Pavir.Ea03760.1.p	2e-40	(Panicum virgatum)

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]