PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04423.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 180aa MW: 19628.2 Da PI: 7.1174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04423.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Zmw_sc04423.1.g00030.1.am.mk 62 YTCTFCHREFKSAQALGGHMNVH 84 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.08E-6	59	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.9E-4	60	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0035	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.115	62	89	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-6	62	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MAPTSSTEEP VVKRIPLHQL LKLQHRLKPA VMWSWAAAPG RPAHDDEADE DALGGAWPPR 60 SYTCTFCHRE FKSAQALGGH MNVHRRDRAK MRGHHGAAGQ KLMGAAPAAG EARPHAAARA 120 EYAVFYPILN SNAAGTVLIP SGDVLLSTPL ALAPAHERCH DVSDGEDDKE VDLELRLWWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	57	84	2	29	superman protein
2l1o_A	1e-12	57	84	2	29	Transcriptional regulator SUPERMAN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880752.1	3e-63	uncharacterized protein LOC112938737
TrEMBL	A0A1E5VI67	1e-72	A0A1E5VI67_9POAL; Uncharacterized protein
STRING	Si012796m	6e-70	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11852	26	33