PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04434.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 288aa MW: 30154.6 Da PI: 8.6996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04434.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93	3.5e-29	70	171	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++Cvl+p++ +++q +++ +++k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+ Zmw_sc04434.1.g00050.1.sm.mkhc 70 SCNGCRVLRKGCSEECVLRPCLqwietAEAQGHATVFIAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVS 148 6*******************9999777889******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelall 97 Gavg++ +++++l+q+++e++l+ Zmw_sc04434.1.g00050.1.sm.mkhc 149 GAVGLLGSGSWHLCQAAVETVLR 171 ***************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.089	69	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-24	70	169	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGLPHPTPWL VRGPSIRALG LAEPIYALPG SPWPKLEGLH ARAKLGCCMR GCGSGAWTRV 60 GALGTTTTMS CNGCRVLRKG CSEECVLRPC LQWIETAEAQ GHATVFIAKF FGRAGLMSFL 120 TAVPEPQRPA VFQSLLYEAA GRTINPVSGA VGLLGSGSWH LCQAAVETVL RGGGIRPLPE 180 FDGGLPGATA DGREPFAFTA RCPVGCSTFS AAKRATTTTT TRIAAPHGAV AEPSCDLGLW 240 LSPESPPAPG DRRRRRPGTP SMTSEESVTT TTTTSSGGRG PELLNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-114	LOB domain-containing protein 37
Swissprot	Q9FN11	3e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	1e-112	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	1e-113	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]