PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04446.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 136aa MW: 14782 Da PI: 10.2244

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04446.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	85	130	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Zmw_sc04446.1.g00080.1.am.mk 85 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 130 78***************************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-17	77	136	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.753	79	134	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-14	80	136	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-14	83	132	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-13	85	130	IPR001005	SANT/Myb domain
CDD	cd00167	7.02E-14	87	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MSPLPCPSLP SHPTPNPPPP PPPVAVHTAQ STPPPPILSL AVPSLPTQAA NPGSAEPGHP 60 EANRRALFGG ETEVEECGRR ARRGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK 120 QCKARWYEWL DPSIKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
5xjc_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
5yzg_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
5z56_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
5z57_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
5z58_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6ff4_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6ff7_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6icz_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6id0_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6id1_L	3e-29	83	136	7	60	Cell division cycle 5-like protein
6qdv_O	3e-29	83	136	7	60	Cell division cycle 5-like protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25524	3	5