PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04458.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 24316.3 Da PI: 11.5817

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04458.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.4	2.5e-25	74	123	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr g++KKA+EL LCdaeva+++fs+ gklyeyss Zmw_sc04458.1.g00060.1.am.mk 74 RIEDKASRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 123 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-32	65	124	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.973	65	125	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.78E-36	66	125	No hit	No description
PRINTS	PR00404	5.3E-27	67	87	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-26	67	133	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-25	74	121	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-27	87	102	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-27	102	123	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MPKISSHDAA LLRWPSGSRT AVPLIPYPLP PHARLARLLS SSPPRSSSPT VPTRHRNRQP 60 SEAMARRGRV ELRRIEDKAS RQVRFSKRRS GLFKKAFELA LLCDAEVALL VFSPAGKLYE 120 YSSSSPLRRA LFWLRLSFAA APTSRHVLET IPNYRYICAT LHDRVEDPGA LCHCCPQHHR 180 LLLGFVRDLV LSGIEFPAPL ALPWRRAPRT WFPGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_A	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	67	152	3	89	Myocyte-specific enhancer factor 2B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398