PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04464.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 141aa MW: 15430.8 Da PI: 10.2537

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04464.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	84	110	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +G+rC+++H++ Zmw_sc04464.1.g00030.1.am.mk 84 PGEADCGYYLRTGGCGFGERCRYNHPR 110 57899********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-4	83	110	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.263	83	111	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	85	110	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	87	111	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	89	110	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MVPAEPRAPA LALKVLLLRF LVSPRSPAGR TAAGSRRVWG LTRRRANAWL VGWFVAGPMW 60 RLGLDGGGEG GQEVGDPARL PERPGEADCG YYLRTGGCGF GERCRYNHPR DRGGTEVNER 120 CVPAFILPPL PNPRNLEPFL I

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP75322	2	2