PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04464.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 184aa    MW: 19133.3 Da    PI: 7.7209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04464.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.8e-122247227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                    +++ C ++ +tGtCk+G++Ck++H++
  Zmw_sc04464.1.g00040.1.sm.mkhc 22 GQPVCEYYVKTGTCKFGSNCKYHHPK 47
                                    5799********************96 PP
2zf-CCCH34.82.7e-116992427
                                    ---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                     +C ++a++G+CkyG  Ck+ H++
  Zmw_sc04464.1.g00040.1.sm.mkhc 69 QPCAYYAQNGYCKYGVACKYDHPM 92
                                    69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.9572048IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-62047IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-72149IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-92247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-62549IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-66592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8646593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-66894IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-56990IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-96992IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MALPFGGGAK NGAASNFPER MGQPVCEYYV KTGTCKFGSN CKYHHPKQDG SVQSVQLNNS  60
GFPLRPGAQP CAYYAQNGYC KYGVACKYDH PMGTLGCSSS ALPLSDTYPI GFPVAALTPS  120
SSSPDLRPDY ISTKDQSVNQ VASAAAAPEP VGAILPKEGY SPDNIMRAQT STTGGDSSSP  180
GGGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.16e-70zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW25e-71C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA2WN237e-71A2WN23_ORYSI; Uncharacterized protein
STRINGOMERI01G09890.11e-72(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7532322
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]