PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04464.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 304aa MW: 32918.8 Da PI: 7.0065

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04464.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.7	6e-11	41	65	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++rtGtC yG+rC+++H+ Zmw_sc04464.1.g00060.1.sm.mkhc 41 GETDCAYYLRTGTCAYGERCRYNHP 65 6789********************8 PP
2	zf-CCCH	35.2	2e-11	96	121	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Zmw_sc04464.1.g00060.1.sm.mkhc 96 GEKECSYYIKTGHCKFGATCKFHHPE 121 5789********************96 PP
3	zf-CCCH	38.4	2.1e-12	248	274	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++Ck++H++ Zmw_sc04464.1.g00060.1.sm.mkhc 248 PGQPECEHYMKTGTCKFGPTCKYHHPQ 274 5789*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.662	39	67	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.3E-6	39	66	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	41	65	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	43	68	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	45	69	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.601	95	122	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-8	96	121	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-4	96	121	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	97	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	100	120	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.056	247	275	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	247	274	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-10	249	274	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-5	251	274	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	253	272	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEPHGGGGDP GTGLEEALQN LGLGGEEEGA AAAARLPERP GETDCAYYLR TGTCAYGERC 60 RYNHPHDRRA AAVNGVGRIT GTTEYPERPG QPLCEGEKEC SYYIKTGHCK FGATCKFHHP 120 ELGAGETANI YPPVQQSTVS SSHPYPHFAS FQMGRPPFVP GSFFPSSYPP MMLPSAVMPM 180 QGWNPYISPM NQVTPAGGQQ TVQAGHPYGL SLQDPTSSVS YGNHYAPFYP SAGPSSSNKQ 240 GHGLPERPGQ PECEHYMKTG TCKFGPTCKY HHPQYFGAPN SNYMLNLLGL PLRPSVQKFE 300 YAVI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967812.1	1e-136	zinc finger CCCH domain-containing protein 5
Refseq	XP_025815660.1	1e-134	uncharacterized protein LOC112892755
Swissprot	Q5NAV3	1e-122	C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A0A9P980	1e-150	A0A0A9P980_ARUDO; Uncharacterized protein
STRING	Pavir.Ea00915.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]