PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04496.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 372aa    MW: 40866.6 Da    PI: 10.5293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04496.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08163203954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zmw_sc04496.1.g00030.1.am.mk 163 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.79E-6177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDFDMLMNST PEAQLELMNA MLQLEQHLTA FPDHGAMMVP STPPSPCVQQ APHPFASSVP  60
HMSAGTNGRA AYHDYQYYSQ QVTPPSSCNS SSSNRSEYTP AHQAPAAGTE GGGNGGDVAG  120
SSAMREMIFR VAALQPVNIE PEMVRPPKRR NVRISTDPQS VAARMRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAASGRR PTAPPPEDNN GAVTYTSAGR  240
VNGQWTFVLA RYRAKPQLLL HDSHLRDATD GETWRRPGFR GRAPAVRLGP FLFTSYAGAQ  300
GQPLCALQPR ADCRRLAADR ASLSTVNQFR PARDRFCRRP LACARVKPLL MARRLVSGCP  360
RATTLPVPSH MI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RPPKRR
2163168RMRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678454.23e-95transcription factor bHLH69
SwissprotQ9SND44e-41HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0A8YXS61e-103A0A0A8YXS6_ARUDO; Uncharacterized protein
STRINGGRMZM2G471635_P012e-95(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]