PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04510.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 478aa MW: 51376.7 Da PI: 10.153

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04510.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	87.4	3.9e-27	300	478	5	134
YABBY 5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 s +eq+Cyv+Cn C+tilavs vP +slfk+vtvrCGhCt+llsvnl+ + +a ++l+ ++ Zmw_sc04510.1.g00120.1.am.mk 300 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQS 380 578**************8777777777777779*********************998676778888988887777 PP YABBY 70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117 + l+e+ + ++++ n ++++as+ ++++ + +++ e+p vp v+r Zmw_sc04510.1.g00120.1.am.mk 381 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 461 78889999**9999998766777777777777777777777666655447776644444444311345577644444 PP YABBY 118 PPekrqrvPsaynrfik 134 PekrqrvPsaynrfik Zmw_sc04510.1.g00120.1.am.mk 462 SPEKRQRVPSAYNRFIK 478 7*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-29	301	478	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
LSRHTVPFSI ARLKLSGPAD RSIGLSAGRL GRACVVKLTG IRTGLRTHGL RATNRSVRSV 60 DLRARFHRAR ENRARPGSGF LSRERKTWPH AGAVKSIARS DAPCHTCPLA RRHSASNARA 120 STLRTYSYEV EYERTATTLA IELLRRKSPD RSGRETAGIA PQLSGARGCE TPEPHHSVPL 180 LLSQTVSRCR PLQRAESTGG EEASAWPPAA FVVQSEPRCL PLPIPASLDC FLRLVDPALT 240 LPAFPSLLSA RSTCIAFSDQ RQRRGARCVG AATDIHLAEI MMSSSSSSTA AFPLDHLAPS 300 PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF KTVTVRCGHC TNLLSVNLRG 360 LLLPPAAPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP SLLMEQASAN LSSITGNSYS 420 SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL DSPEKRQRVP SAYNRFIK

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

LSRHTVPFSI ARLKLSGPAD RSIGLSAGRL GRACVVKLTG IRTGLRTHGL RATNRSVRSV  60
DLRARFHRAR ENRARPGSGF LSRERKTWPH AGAVKSIARS DAPCHTCPLA RRHSASNARA  120
STLRTYSYEV EYERTATTLA IELLRRKSPD RSGRETAGIA PQLSGARGCE TPEPHHSVPL  180
LLSQTVSRCR PLQRAESTGG EEASAWPPAA FVVQSEPRCL PLPIPASLDC FLRLVDPALT  240
LPAFPSLLSA RSTCIAFSDQ RQRRGARCVG AATDIHLAEI MMSSSSSSTA AFPLDHLAPS  300
PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF KTVTVRCGHC TNLLSVNLRG  360
LLLPPAAPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP SLLMEQASAN LSSITGNSYS  420
SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL DSPEKRQRVP SAYNRFIK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121