PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04554.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 158aa MW: 17399.3 Da PI: 7.5854

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04554.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.3	2.1e-11	74	131	38	99
EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++W+v++ + +++ +l++GW eF a+g+ + fvv++++ +++l+vk+f++ Zmw_sc04554.1.g00010.1.sm.mk 74 VSPFGSKVWRVEV--GRDGEGAFLGRGWPEFLAAHGIGVDWFVVLRHE--GGATLTVKAFDA 131 4445569****..99999**********************65..58889**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-11	76	134	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-10	78	134	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.3E-9	78	131	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAEHFKMLLS PPIERPVSIT PRPLTILKRR HSTPLTELNR PADPIILVLQ RVADELAGCF 60 AVADGVPALV ALVVSPFGSK VWRVEVGRDG EGAFLGRGWP EFLAAHGIGV DWFVVLRHEG 120 GATLTVKAFD ASFCIKEFRA PAEGKDFRVA LIREWFGE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002447504.2	8e-41	putative B3 domain-containing protein Os04g0346900
Swissprot	Q7XS75	2e-19	Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBL	A0A1Z5RBP1	4e-39	A0A1Z5RBP1_SORBI; Uncharacterized protein
STRING	Sb06g002075.1	3e-38	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP425	35	187