PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04560.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 185aa MW: 20966 Da PI: 8.8551

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04560.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.8e-32	59	115	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k Zmw_sc04560.1.g00030.1.sm.mk 59 DGYSWRKYGQKKVKGSEFPRSYYKCTHPNCPVKRKVETTL-DGQIAEIVYSGEHNHPK 115 9*************************************.*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	3.66E-25	55	116	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.1E-28	56	116	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	57	115	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	59	114	IPR003657	WRKY domain
PROSITE profile	PS50811	22.905	59	116	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDERLRLQQS TGPRLKDAGS GMLEEMEVDT EQHVPCDHLA TYQAVRKPLG SLKNCVSYDG 60 YSWRKYGQKK VKGSEFPRSY YKCTHPNCPV KRKVETTLDG QIAEIVYSGE HNHPKPHSLM 120 KPLSSTKTEV AVTNLRWQKW VQETTRLPVI TVSNCINQFT PAHLIVGSQF QIALFHLFLG 180 STGCC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-17	59	116	16	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024311123.1	9e-52	WRKY transcription factor 44
Swissprot	Q6B6R4	3e-27	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A0A9PMD8	1e-54	A0A0A9PMD8_ARUDO; Uncharacterized protein
STRING	BRADI4G45290.1	4e-51	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2325	29	41

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]