PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04589.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 176aa MW: 19056.2 Da PI: 5.8799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04589.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H +H Zmw_sc04589.1.g00020.1.sm.mk 50 FECKTCRKRFPSFQALGGHRTSH 72 89**********99998888777 PP
2	zf-C2H2	12.1	0.00062	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Zmw_sc04589.1.g00020.1.sm.mk 98 HECAVCGLEFSMGQALGGHMRRH 120 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-5	47	74	No hit	No description
Pfam	PF13912	4.1E-11	49	72	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.159	50	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.9E-5	96	125	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.14E-6	96	125	No hit	No description
Pfam	PF13912	3.9E-11	97	122	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.217	98	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.89	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MTLSTRQEAE ESKEMEEGLK AHADALLSLS LSSTTTTTSS RKAMAAEGVF ECKTCRKRFP 60 SFQALGGHRT SHTRLQARML SDPPAATAAE RDARARTHEC AVCGLEFSMG QALGGHMRRH 120 RGEAPPAVLA QQEEETMPDL NFPPLENDDG GGGRTGQDQE PSSGDQQHPQ LLNLLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817787.1	4e-67	zinc finger protein ZAT12-like
TrEMBL	A0A2S3HQN8	1e-65	A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DEP5	1e-65	A0A2T7DEP5_9POAL; Uncharacterized protein
STRING	BRADI2G54500.1	1e-62	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157