PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04591.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 250aa    MW: 26681.5 Da    PI: 5.0257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04591.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16112155248
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                                    y+GVr+++ +g+++AeIrd + ng  +r++lg+f taeeAa a+++
  Zmw_sc04591.1.g00070.1.sm.mk 112 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYDR 155
                                   69*******.**********54455..******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-20111168No hitNo description
PfamPF008472.1E-11112155IPR001471AP2/ERF domain
SMARTSM003801.2E-18112178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-22112159IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-16112158IPR016177DNA-binding domain
PROSITE profilePS5103218.11112154IPR001471AP2/ERF domain
PRINTSPR003679.0E-11113124IPR001471AP2/ERF domain
PRINTSPR003679.0E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEKILQRL  60
PSLGRWISMG AEEWDELLSG TTPDASGEEL LVSSPPALKH EDRAAPVPTC KSYRGVRRRP  120
WGKFAAEIRD TRRNGARVWL GTFATAEEAA LAYDREVAAA GSGGSEATRV LRRRRRRTGA  180
ADAASSTRSA CSDQTMVSFA WGSGQEGGMM TERSSSDAGA IAFEDIGGEC WDYLFAPLWG  240
DDILIRHQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19111155448ATERF1
3gcc_A3e-19111155448ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RVLRRRRRR
2172177RRRRRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.12e-83ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P95e-82A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.Ca00939.1.p5e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736