PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04611.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 202aa MW: 22339.7 Da PI: 11.7926

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04611.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.4	1e-09	21	82	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+laL++a++ + +++r+ l ++W++v+ + ++++ qC++k e+l++r + ++ Zmw_sc04611.1.g00040.1.sm.mk 21 CWTPDETLALVRAYTARRLAVGREHLTSADWAAVATAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*******************************99865....689***********9998765 PP
2	Myb_DNA-binding	21.5	5.4e-07	21	73	3	47
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 WT++E + lv+a + +W+++a + +t+ qc+++ k+ Zmw_sc04611.1.g00040.1.sm.mk 21 CWTPDETLALVRAYTARRLAvgrehltsaDWAAVATAAP-SKTARQCRHKVEKL 73 6**********99877668899***********.*******98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.69E-5	18	72	IPR009057	Homeodomain-like
Pfam	PF13837	6.6E-8	20	82	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.4E-5	22	75	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.504	22	74	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MASPSASPRA NGSGRRVPPP CWTPDETLAL VRAYTARRLA VGREHLTSAD WAAVATAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP IMSRVQSPSP SRSPSPPPAV 120 SLPSPCSPPA SPPRKRRRDD YGVSDLVGAL RAIGEGFLRA EERRMEAARE TQRMRMDMAL 180 RHLDAQRRLM EVFVGRIVDA LD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	KLRRRLR
2	72	78	LRRRLRS
3	133	137	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001144478.1	1e-82	uncharacterized protein LOC100277445
TrEMBL	B6TUK0	2e-81	B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRING	GRMZM2G320827_P01	4e-82	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24