PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04615.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 360aa MW: 37008 Da PI: 9.4651

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04615.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.2e-37	66	122	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++ l+cprC+s+ tkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Zmw_sc04615.1.g00030.1.sm.mk 66 QAPLRCPRCNSSSTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 122 66789**************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.1E-31	68	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	69	123	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-24	69	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDQLKSVNDG NPTPLPMLLH PVVSNPSPTS SSSTSSRSSA QPQPQRSTSA TSSPKGQGQG 60 QGAAEQAPLR CPRCNSSSTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK 120 PRPMPMPAAK PAISCKAGGV GPQLGLGVGM GMGGASPVPW ASSQQAAAAQ LMALLNSARN 180 VQGHAGSNVH RLLGLDTMGH LPLHVLPGGP GAGNVAGMPA SLWPLSAPRQ VPATPAHMDS 240 QLGMSPLGHH DMLSNLGIKL PPSSASPAPS YYSDQLHAVV SNAGHPHEYD VASTTSLPCT 300 TAVTSLPPAI SSVSAALSSA TAGLDLPPVS LSAPEMQYWT GPAAMSVAWP DLTTPNGAFP

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDQLKSVNDG NPTPLPMLLH PVVSNPSPTS SSSTSSRSSA QPQPQRSTSA TSSPKGQGQG  60
QGAAEQAPLR CPRCNSSSTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK  120
PRPMPMPAAK PAISCKAGGV GPQLGLGVGM GMGGASPVPW ASSQQAAAAQ LMALLNSARN  180
VQGHAGSNVH RLLGLDTMGH LPLHVLPGGP GAGNVAGMPA SLWPLSAPRQ VPATPAHMDS  240
QLGMSPLGHH DMLSNLGIKL PPSSASPAPS YYSDQLHAVV SNAGHPHEYD VASTTSLPCT  300
TAVTSLPPAI SSVSAALSSA TAGLDLPPVS LSAPEMQYWT GPAAMSVAWP DLTTPNGAFP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981654.1	1e-152	dof zinc finger protein 4
TrEMBL	A0A368SE80	1e-150	A0A368SE80_SETIT; Uncharacterized protein
STRING	Si039685m	1e-151	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44