PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04638.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 376aa MW: 41322.8 Da PI: 6.3485

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04638.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	110	162	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d++k++G + ++Ia++++ gRt++++k++w+++l Zmw_sc04638.1.g00060.1.am.mk 110 KGPWTPEEDQKLMDYIKKHGHRswrplpKLAAIAKHLP-GRTDNEIKNFWNTHL 162 79******************999999999***.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.797	105	166	IPR017930	Myb domain
SuperFamily	SSF46689	2.94E-16	105	172	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-24	108	163	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-15	109	164	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	110	162	IPR001005	SANT/Myb domain
CDD	cd00167	4.15E-16	112	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKVTPAAATT TTTKGERFFS PMLTSLALRA WGRHGPDRAL VGKHVELIAR PRSGSSSTDG 60 HTPASTMTVV EVERIYSEIW GSSAVWIVWV QFSDLIFKAS PCCDENGLKK GPWTPEEDQK 120 LMDYIKKHGH RSWRPLPKLA AIAKHLPGRT DNEIKNFWNT HLKKKLIQMG FDPMTHQPRT 180 DFFAALPQLI ALANLRQLVE QRPWDDHAAS LQAEAVQAAK LQYLQSMLHS AASIATSPSS 240 SSINATPSNL DQIGLLSPQQ MSSLSPLPSP CLLESISDQD IVAGQVSDIQ MPNSFFELPI 300 NNDANKNTDY TAMGRVEGDS STPKTLLMSQ NSLPPLADFP VSNLGDAFST SSCGGSNTQL 360 PSWPELFDEQ FFSEFA

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKVTPAAATT TTTKGERFFS PMLTSLALRA WGRHGPDRAL VGKHVELIAR PRSGSSSTDG  60
HTPASTMTVV EVERIYSEIW GSSAVWIVWV QFSDLIFKAS PCCDENGLKK GPWTPEEDQK  120
LMDYIKKHGH RSWRPLPKLA AIAKHLPGRT DNEIKNFWNT HLKKKLIQMG FDPMTHQPRT  180
DFFAALPQLI ALANLRQLVE QRPWDDHAAS LQAEAVQAAK LQYLQSMLHS AASIATSPSS  240
SSINATPSNL DQIGLLSPQQ MSSLSPLPSP CLLESISDQD IVAGQVSDIQ MPNSFFELPI  300
NNDANKNTDY TAMGRVEGDS STPKTLLMSQ NSLPPLADFP VSNLGDAFST SSCGGSNTQL  360
PSWPELFDEQ FFSEFA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953959.1	1e-146	transcription factor MYB16
TrEMBL	A0A368PSI8	1e-144	A0A368PSI8_SETIT; Uncharacterized protein
TrEMBL	K3YU39	1e-144	K3YU39_SETIT; Uncharacterized protein
STRING	Si017785m	1e-145	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132