PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04639.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 413aa MW: 45146.6 Da PI: 10.0237

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04639.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3.1e-09	213	234	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg Zmw_sc04639.1.g00010.1.am.mk 213 PCPEFRKGGACRKGDNCEYAHG 234 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-5	207	238	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.441	208	236	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-6	208	235	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-5	213	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	213	234	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
TGRGGEPGRG ERVRWGNGRR ELPRARSAWR GEGPRVLSRT REPRCLEGND SGIGSIDLTE 60 CRAWGMSARG DVTCYVHTRN GRSRSPRDDA RSSLHLRLGV RDLHLSHMCD RFHLSHVHRR 120 ILDSSVGVGV GLRFSAGVAG SASPSDGPLA VAIAITTQEQ GEPDSGRQSS PVNENATKEE 180 LFFRLLHHVN VLRSAQANAR RRDPRRYSYS CVPCPEFRKG GACRKGDNCE YAHGVFECWL 240 HPAQYRTRLC KDELRALSLK QAGDMPAYSA VPDTQLHIPT SPRVAANTAF GMDHSMAKAI 300 MSSRASAFAK RSQSFIDRSG RAPAARSLMS PAPTNSPSML SDWGSPGGKL DWGVQGDELN 360 KFRKSASFAF RGQSAAPVAS PAEPDVSWVN SLVRDGHAGD ILAQWPEQEQ MVA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

TGRGGEPGRG ERVRWGNGRR ELPRARSAWR GEGPRVLSRT REPRCLEGND SGIGSIDLTE  60
CRAWGMSARG DVTCYVHTRN GRSRSPRDDA RSSLHLRLGV RDLHLSHMCD RFHLSHVHRR  120
ILDSSVGVGV GLRFSAGVAG SASPSDGPLA VAIAITTQEQ GEPDSGRQSS PVNENATKEE  180
LFFRLLHHVN VLRSAQANAR RRDPRRYSYS CVPCPEFRKG GACRKGDNCE YAHGVFECWL  240
HPAQYRTRLC KDELRALSLK QAGDMPAYSA VPDTQLHIPT SPRVAANTAF GMDHSMAKAI  300
MSSRASAFAK RSQSFIDRSG RAPAARSLMS PAPTNSPSML SDWGSPGGKL DWGVQGDELN  360
KFRKSASFAF RGQSAAPVAS PAEPDVSWVN SLVRDGHAGD ILAQWPEQEQ MVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807185.1	5e-87	zinc finger CCCH domain-containing protein 33-like
Swissprot	Q688R3	8e-81	C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBL	A0A287EPU9	1e-102	A0A287EPU9_HORVV; Uncharacterized protein
STRING	Pavir.J10016.1.p	2e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6013	21	33

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]