PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04641.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 186aa    MW: 20757.9 Da    PI: 12.0435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04641.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17131180255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Zmw_sc04641.1.g00010.1.am.mk 131 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 180
                                   69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-27130186IPR001471AP2/ERF domain
PfamPF008471.7E-10131180IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-19131186IPR016177DNA-binding domain
SMARTSM003802.5E-28131186IPR001471AP2/ERF domain
PROSITE profilePS5103221.549131186IPR001471AP2/ERF domain
PRINTSPR003671.1E-8132143IPR001471AP2/ERF domain
CDDcd000182.38E-21134186No hitNo description
PRINTSPR003671.1E-8154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPPRTRKIPV QIPPSKWIAR ERREKARPTP KATASCCGSG LLPFRRPAYR YPSREGSRSR  60
SRRRRLGWLL MQGEYRSSSE ESAAAAAAAA AAAAAAMAPL AAAAAAAVKM EEQAAMAPSA  120
EQHQQQQPRR QYRGVRMRKW GKWVAEIREP HKRTRIWLGS YATPVAAARA YDTAVFYLRG  180
RSARLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-12130186461ATERF1
3gcc_A1e-12130186461ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977035.11e-40ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A0A8YFP43e-39A0A0A8YFP4_ARUDO; Uncharacterized protein
TrEMBLA0A368RZW13e-39A0A368RZW1_SETIT; Uncharacterized protein
STRINGPavir.J27349.1.p2e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075