PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04648.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 439aa    MW: 49082 Da    PI: 6.1438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04648.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10241287354
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     +a+ + Er RR+++N ++  Lr+l P++     +K + a+i+  A+eYI+ L
  Zmw_sc04648.1.g00090.1.am.mkhc 241 KANFATERERREQLNVKYGALRSLFPNP-----TKGDRASIVGDAIEYINAL 287
                                     68899***********************.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.44238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7241287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-11241302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-6244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9245300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.64E-7247287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKVRESKMIV SGGYFDGSHD SIIMSRSMIH DSSESFIYDN TNAEAQKFRV TSFSIEDLTN  60
PADAHLTSEP ASVVYPLQHH HHLGFDIEQD HSSHMIQEVP PMETANLVSS ICGFQDHILS  120
HDIGQGHSMT VQQQILNYDD ASYSNGAYNL SGLAIHESGM MFNDPTLPLG YHATQSHLLK  180
DLYHSLPQNY DLLISNDERD GMIGAPGASE NIFQEINGGQ FDSPTQGRRR QKGGFGKAKG  240
KANFATERER REQLNVKYGA LRSLFPNPTK GDRASIVGDA IEYINALNKT MKEMKILVEK  300
KRNNTDRRKK LDDEAADDGD SSSVQPVRND LNDEMHGALK SFWVQKRSKD CEVDVRIVHD  360
EINIKFTENK RTDSLLCATK VLEEFHLDLI NVVGGTIGDH HTFMFNTKIP KGSSVFACAV  420
AKKLIEAVEM KNQALDILN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452697.10.0transcription factor EAT1
SwissprotQ7X8R01e-150EAT1_ORYSJ; Transcription factor EAT1
TrEMBLC5Y0E40.0C5Y0E4_SORBI; Uncharacterized protein
STRINGSb04g030850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796