PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04649.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 155aa MW: 17055.3 Da PI: 8.41

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04649.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	69.8	5.2e-22	3	77	300	374
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ega+rrerh +l+kW +rle aGF++vpls+ a+ + +l +++++g + e +g+l+l+W + pL+svSaWr Zmw_sc04649.1.g00010.1.am.mk 3 REGARRRERHDRLQKWAARLEVAGFRNVPLSYVAMRRGNEMLGRCGVRGCESAELRGCLLLCWCTCPLYSVSAWR 77 699***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.48	1	57	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-19	3	77	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
LLREGARRRE RHDRLQKWAA RLEVAGFRNV PLSYVAMRRG NEMLGRCGVR GCESAELRGC 60 LLLCWCTCPL YSVSAWRPDP GEAAGDTEYL SPPSQVDVDM LNAFLGVGGG VTIGSTLKPH 120 RRLNDVQPPG QCRQCRTPGR HDADGEHGGT AEAQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980153.2	4e-34	scarecrow-like protein 3
TrEMBL	A0A3L6PHS5	9e-34	A0A3L6PHS5_PANMI; Scarecrow-like protein 3
STRING	Pavir.J31854.1.p	1e-35	(Panicum virgatum)
STRING	Si028262m	3e-33	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176