PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04657.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 96aa MW: 10992.5 Da PI: 6.2304

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04657.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	80.7	2.3e-25	32	90	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y Zmw_sc04657.1.g00080.1.am.mk 32 FLTKTYQLVDDPCTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 90 9********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-27	23	91	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.5E-22	28	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-23	31	90	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-21	32	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-16	32	55	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-16	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-16	83	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MAFQLVERCG EMVVSTMESS AHAKPAPVPA PFLTKTYQLV DDPCTDHIVS WGDDDTTFVV 60 WRPPEFARDL LPNYFKHNNF SSFVRQLNTY VRKALV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-18	23	96	12	84	Heat shock factor protein 1
5d5u_B	6e-18	23	96	21	93	Heat shock factor protein 1
5d5v_B	6e-18	23	96	21	93	Heat shock factor protein 1
5d5v_D	6e-18	23	96	21	93	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804091.1	2e-52	heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	2e-49	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A2S3H4D8	6e-51	A0A2S3H4D8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EZ90	5e-51	A0A2T7EZ90_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QPD0	6e-51	A0A3L6QPD0_PANMI; Heat stress transcription factor B-4b-like
STRING	Pavir.J32257.1.p	6e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]