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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc04662.1.g00060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | G2-like | ||||||||
| Protein Properties | Length: 171aa MW: 18521.6 Da PI: 5.7998 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 31 | 5.7e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55
m+vk+Ltl+hvkSHLQ+YR+
Zmw_sc04662.1.g00060.1.am.mk 1 MDVKDLTLAHVKSHLQMYRT 20
9******************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 171 aa Download sequence Send to blast |
MDVKDLTLAH VKSHLQMYRT VKNTERPATS LDQADGFENG SAGEICDDNS VDLHGYGGGG 60 RPETAPRHGR LAASAACNDH GSGTDAHACC PMELLRKVVT MTPSLALCLE DWTSLPNTGS 120 IQSLKDHQIQ QSKSLEILSD MNSCVSETTT SITSDLNLEF TLGRPHQNRR N |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025821359.1 | 9e-67 | probable transcription factor RL9 isoform X1 | ||||
| TrEMBL | A0A3L6RHT4 | 1e-66 | A0A3L6RHT4_PANMI; Putative transcription factor RL9 isoform X1 | ||||
| STRING | Pavir.Fa01877.1.p | 6e-68 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4721 | 36 | 65 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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